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BioHarbor

io.github.danielLuo2/bioharbor v0.1.4

Official Registry git

Repository

Run real bioinformatics from your AI agent. Reliable, reproducible, on your own GPUs.

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Install connect locally via stdio

Run in your terminal

claude mcp add bioharbor -- uvx bioharbor

Add to claude_desktop_config.json

{
  "mcpServers": {
    "bioharbor": {
      "command": "uvx",
      "args": [
        "bioharbor"
      ]
    }
  }
}

Add to ~/.cursor/mcp.json

{
  "mcpServers": {
    "bioharbor": {
      "command": "uvx",
      "args": [
        "bioharbor"
      ]
    }
  }
}

Add to Cursor →

Add to ~/.codeium/windsurf/mcp_config.json

{
  "mcpServers": {
    "bioharbor": {
      "command": "uvx",
      "args": [
        "bioharbor"
      ]
    }
  }
}

Add to .vscode/mcp.json

{
  "servers": {
    "bioharbor": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "bioharbor"
      ]
    }
  }
}

Add to VS Code →

Add to cline_mcp_settings.json

{
  "mcpServers": {
    "bioharbor": {
      "command": "uvx",
      "args": [
        "bioharbor"
      ]
    }
  }
}

Packages

pypi bioharbor@0.1.4

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